PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511722.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 225aa MW: 23644.6 Da PI: 7.7851

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511722.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	4.8e-39	31	132	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r +a+ +++yeA+ar+ dPvyG+v++i++lqqq++ l+a+l XP_023511722.1 31 PCGACKFLRRKCVAECIFAPYFSSEQgAARFAAVHKVFGASNVSKLLLHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVAYLQAQL 125 7*********************9989***************************************************************** PP DUF260 95 allkeel 101 ++k++l XP_023511722.1 126 MQAKAQL 132 9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MASSSSSSST ANSSVSGGGG GGGGGGGGGS PCGACKFLRR KCVAECIFAP YFSSEQGAAR 60 FAAVHKVFGA SNVSKLLLHV PAHDRCEAVV TIAYEAQARI LDPVYGCVAH IFALQQQVAY 120 LQAQLMQAKA QLAQTLMESG GNMELQWTGS FNNNLSNGIP SNYETQIMNP AVSPQSSVES 180 AANNDAALMF MNHYQESQTL ARRRSASCHG DLGELQALAL RMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	3e-59	LBD family protein