PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023511942.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 780aa MW: 86562.1 Da PI: 6.8072

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023511942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.6e-23	170	271	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_023511942.1 170 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFL--RGE 260 99**************************9887775..458********************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_023511942.1 261 NGELRLGIRRA 271 9999**996 PP
2	Auxin_resp	121	9.3e-40	296	377	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++Fvv+++k++k+++++v vG+Rfkm+fe++ds+err+ G+vvg+ d+dp+rWpnSkWr+L XP_023511942.1 296 VVKAVSTKSTFDVFYNPRAYHAQFVVSCQKYVKSINNPVNVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCL 377 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MEIDLNQTAS EEGKNAYCHG NCEEGRCNCC LSSSTSSCSS NSSSTPASSS TYLELWHACA 60 GPLTSLPKKG NAVVYFPQGH LEQIASASPF SPMEMATFDL QPQILCRVIN VHLLANKEND 120 EVYTQLTLLP LPELLGTGVE GKELEELALN RAADGDGSGG SPTRSTPHMF CKTLTASDTS 180 THGGFSVPRR AAEDCFPPLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS 240 IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLTRVVKAV 300 STKSTFDVFY NPRAYHAQFV VSCQKYVKSI NNPVNVGTRF KMRFEMDDSP ERRFNGVVVG 360 IGDMDPFRWP NSKWRCLTVR WDKDSDHQER VSPWEIDPSV SLPPLSVQSS PRLKKLRTSL 420 QAAPPNNAFN GRGGFMDFED SVRSSKVLQG QENVGMVSPF YGCDNTAKRS LEFEVRSSAQ 480 QNQASGGVEK LNIGDYVTSF TGFMESDRFL KVLQGQEICS LRPQTRKPEP SLGVWGKFNL 540 SDNSFNPFQS PNSSFYHMMS NGARNMHYPR RDIYSTGQAA MMSSNDINFP RESALFNPSA 600 KMERANSTPP TLGSTMRNSK DENVNENRTG CKLFGFSLTT ETATNMQSSG KRSCTKVHKQ 660 GSLVGRAIDL SRLNGYTDLL SELERLFSME GLLKDPDKGW RVLYTDNEND VMVVGDYPWH 720 DFCDAVSKIH IYTEEEVEKM TNGVISDDTQ SCLDQAALCM EASKSSSVGQ PDSSPTVVRV

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MEIDLNQTAS EEGKNAYCHG NCEEGRCNCC LSSSTSSCSS NSSSTPASSS TYLELWHACA  60
GPLTSLPKKG NAVVYFPQGH LEQIASASPF SPMEMATFDL QPQILCRVIN VHLLANKEND  120
EVYTQLTLLP LPELLGTGVE GKELEELALN RAADGDGSGG SPTRSTPHMF CKTLTASDTS  180
THGGFSVPRR AAEDCFPPLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS  240
IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLTRVVKAV  300
STKSTFDVFY NPRAYHAQFV VSCQKYVKSI NNPVNVGTRF KMRFEMDDSP ERRFNGVVVG  360
IGDMDPFRWP NSKWRCLTVR WDKDSDHQER VSPWEIDPSV SLPPLSVQSS PRLKKLRTSL  420
QAAPPNNAFN GRGGFMDFED SVRSSKVLQG QENVGMVSPF YGCDNTAKRS LEFEVRSSAQ  480
QNQASGGVEK LNIGDYVTSF TGFMESDRFL KVLQGQEICS LRPQTRKPEP SLGVWGKFNL  540
SDNSFNPFQS PNSSFYHMMS NGARNMHYPR RDIYSTGQAA MMSSNDINFP RESALFNPSA  600
KMERANSTPP TLGSTMRNSK DENVNENRTG CKLFGFSLTT ETATNMQSSG KRSCTKVHKQ  660
GSLVGRAIDL SRLNGYTDLL SELERLFSME GLLKDPDKGW RVLYTDNEND VMVVGDYPWH  720
DFCDAVSKIH IYTEEEVEKM TNGVISDDTQ SCLDQAALCM EASKSSSVGQ PDSSPTVVRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein