PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512010.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 196aa    MW: 21107.8 Da    PI: 4.9151
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.69.2e-43351341100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+a+la
  XP_023512010.1  35 PCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLA 129
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023512010.1 130 KAQAE 134
                     *9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MEGSDSIITL SSTPPSPSPS SSSSPAPPPP VVLSPCAACK ILRRRCAEGC VLAPYFPPTE  60
PAKFAIAHRV FGASNIIKFL QELPESQRAD AVSSLVYEAS ARIRDPVYGS AGAICQLQKQ  120
VNELQAQLAK AQAEVVNMQC QQANLVAFVC RELAQSHQSS FDDLNADSHS GLFQSISSPS  180
YFDDTNVNPL WEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-62LBD family protein