PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512055.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family NF-YC
Protein Properties Length: 228aa    MW: 26040 Da    PI: 8.8239
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.77.1e-151212101099
           NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      e++ + k  ++P+ rikki++ ++   +i  ea  l+ ka e+f++++   ++  + + ++++l    ++++v + + +dfl d vp++
  XP_023512055.1 121 EEEEVEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEK 210
                     44555567789***********9999999**********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MASSKKSSSE AKSKEAGTSK PAPKNKTHNN NNNNARTIDK VYSKKKKVSN NNNNNKHTSN  60
GSVKENEVLP ISAPGDAEED RVETTSKSPN TTKSKKVKRN HGKKEENGYA EEEEEEEEAE  120
EEEEVEEKIY KFPMNRIKKI MRDENSDLRI NQEALFLVNK ATEMFLVQFC KDAYACCAQD  180
RKKSLAYKHL SSVVCKRKRY DFLSDFVPEK LKFEDALKER SMAESGKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181199RKKSLAYKHLSSVVCKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.15e-34NF-YC family protein