PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512105.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 332aa    MW: 36844.4 Da    PI: 7.5006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-1688133147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
   XP_023512105.1  88 RGHWRPAEDTKLRELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 133
                      899*****************************.***********996 PP
2Myb_DNA-binding568.8e-18140183146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_023512105.1 140 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 183
                      678*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MKKPVMGMLV DDDYGMKVEE SMDLDLNSAL MSISDFPFSC ESMMSRSSET DFSDGFVENH  60
NANPASCSNA NNNNTTTPTG AQSRLCARGH WRPAEDTKLR ELVAIYGPQN WNLIAEKLEG  120
RSGKSCRLRW FNQLDPRINR RAFSEEEEER LMQAHRIYGN KWAMIARLFP GRTDNAVKNH  180
WHVIMARKYR EHSRCYRRRK LTQSVYTKMD QDLSFLKHHN MPNFQASIGA VDYAFLTQMP  240
IAGAEAMPCD TPFFTSCAHL SNLNVLPDPK SRFWDGTGNG ILVPGSQSEY GACNTAAAAA  300
ANDGVGGSQV ATGGSSSSPR FIDFLGVGAT GS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.19e-77MYB family protein