PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512119.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 255aa MW: 27732.3 Da PI: 9.8714

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.7	1.5e-19	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ede l ++v+++G+++W++I++ ++ gR++k+c++rw++ XP_023512119.1 9 KGPWSPQEDEALRRLVRKYGPRNWSLISKSIP-GRSGKSCRLRWFNQ 54 79****************************.*********996 PP
2	Myb_DNA-binding	53.4	6.1e-17	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a +++G++ W+tIar + gRt++ +k++w++ XP_023512119.1 63 AFTAEEDETIINAQALYGNK-WATIARLLS-GRTDNAIKNHWNST 105 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MAKEIDRIKG PWSPQEDEAL RRLVRKYGPR NWSLISKSIP GRSGKSCRLR WFNQLSPQVE 60 HRAFTAEEDE TIINAQALYG NKWATIARLL SGRTDNAIKN HWNSTLKRKS GGCNTNSPPL 120 KSPSESDVSD SSFFPGVSSS HVYRPVARSG GVVPPCETVS SSNDPLTSLS LSLPGAESSE 180 EKSVPGMGGV WAEERNKKGF EIGGSDLMGV MQEMIRKEVR KYMGGLLEQS VGGGVCVQQA 240 AAGGFRNFVS VSKSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	5e-73	MYB family protein