PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512167.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 220aa MW: 24657.8 Da PI: 8.7514

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k++G g W++ ++ g+ R++k+c++rw +yl XP_023512167.1 14 KGAWTKEEDQRLINYIKLHGEGGWRSLPNAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.6	1.4e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++TteE el+v+++ +lG++ W++Ia++++ gRt++++k++w+++ XP_023512167.1 67 RGNFTTEENELIVNLHSLLGNK-WSLIAAKLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MGRSPCCEKQ HTNKGAWTKE EDQRLINYIK LHGEGGWRSL PNAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TTEENELIVN LHSLLGNKWS LIAAKLPGRT DNEIKNYWNT HIKRKLYSQG 120 IDPRTHRPLV NKGSTCLTRE VEDSNSNSSG SCLTTEVEEN PELNLNLELS IGLHPHDPTT 180 KSPGGGGGSC FSPILSTTDR VRNGNFLLQP HLFTCYTSST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-81	MYB family protein