PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512206.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 153aa    MW: 16886 Da    PI: 10.2886
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512206.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY182.62.2e-56114323169
           YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvir 117
                     +vsvP + +f++vtvrCGhC++llsvn+  + q+l+ ++    + ++++   + ++++  +s  ++++s+ t+++s  l ++ +++  r+pp ir
  XP_023512206.1   1 MVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSPPGNKQQQVSGGDWSKDRGSSSSSSSSSSKCTKIAS--L-DSAERDQHRIPP-IR 91 
                     59************************************97333333333333333333333333333333333332..3.344555566667.9* PP

           YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                     PPek+qrvPsaynrfikeeiqrika+nPdishreafs+aaknWah+P+i  g
  XP_023512206.1  92 PPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIRCG 143
                     ************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MVSVPCNNMF TLVTVRCGHC SNLLSVNMGA SLQVLPPQDS PPGNKQQQVS GGDWSKDRGS  60
SSSSSSSSSK CTKIASLDSA ERDQHRIPPI RPPEKKQRVP SAYNRFIKEE IQRIKANNPD  120
ISHREAFSTA AKNWAHYPHI RCGQKVDGNK QTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-53YABBY family protein