PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512238.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 310aa    MW: 34918.9 Da    PI: 6.3169
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.19.7e-231461249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + e ks +qvtfskRr+g++ KA ELSvLC+ae+a++++ss++kly++
  XP_023512238.1 14 KLEKKSTQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
                    57899******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MKKSLGRRKI EIKKLEKKST QQVTFSKRRA GLFNKAAELS VLCGAEIAIL VASSRNKLYT  60
FGHPNVESLL DRFLTGNSAP PKPAEAYLPL DELNRDFDDV AAEYDIEKRR TAERLSNDRF  120
WWDEPLESMK IDELKRFRSS LVDLRGKVAE RVEKFTAMRK EGSLLPALQP STPPSIDLVE  180
NLERPPTPPP SIGRFGNLQW PSTPPSIDLV ENLQRPPTSP SIGLFENLQW PSTPPSIDLV  240
ENLQQPQTPP SIGLFEKIQW PSTPPSIDFV ESLQWSPMPS IHLVENDQCL LSSFQISGNH  300
SVARGLNMLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-28M-type_MADS family protein