PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512256.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 233aa MW: 26963.1 Da PI: 4.99

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.8e-18	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grW++eEde+l +v+++G+ +W++I++ g+ R++k+c++rw +yl XP_023512256.1 19 KGRWSKEEDEKLRAYVTKYGSWNWRLIPKFAGLSRCGKSCRLRWMNYL 66 79********************************************97 PP
2	Myb_DNA-binding	52.1	1.5e-16	72	116	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eEd+ ++++ + lG++ W++Ia++++ gRt++++k++w++ XP_023512256.1 72 RGNFQKEEDQTILRLQATLGNR-WSAIAAHLP-GRTDNEIKNHWHTN 116 899*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MEEEGDERER EDGENGRRKG RWSKEEDEKL RAYVTKYGSW NWRLIPKFAG LSRCGKSCRL 60 RWMNYLAPNI KRGNFQKEED QTILRLQATL GNRWSAIAAH LPGRTDNEIK NHWHTNLKKL 120 LDQNPSNTEV EEAAASSCSE LRIREELDET LFVLNSDMAA PELAAKHEGM NFGETETWVV 180 GLNAEHSMEL GGNLWTDPFV LEDPLSLDNN PTHVPMDLFQ HYEMFPPSDR TKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-46	MYB family protein