PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512278.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 249aa MW: 27604.5 Da PI: 6.041

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103	1.6e-32	131	188	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYY+Cts++C+vkk+vers+edp +v++tYeg+Hnh XP_023512278.1 131 EDGYRWRKYGQKAVKNSPFPRSYYKCTSQNCSVKKRVERSSEDPCFVVTTYEGKHNHY 188 8********************************************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MSNNEDHEKD PYYPNFEAFD PSNVGFYSDF LYDYNNFLST DIDISCSSSE AISPINDALK 60 KSLGLGESVA IGEHPSTPNS STTCSSVEAA AGGSDSAKSG EVKLDGRKKK EKREKGPRFA 120 FLTKSEIDNL EDGYRWRKYG QKAVKNSPFP RSYYKCTSQN CSVKKRVERS SEDPCFVVTT 180 YEGKHNHYCP ITLRGHNVAG VYPPSASPSL IPARILSGEF YGGVDVQQQY YEVPGYGVLE 240 DLVNPKQNP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	112	RKKKEK
2	107	114	RKKKEKRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	9e-42	WRKY family protein