PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512279.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30223.2 Da    PI: 9.0524
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_023512279.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58
                    79***********************************************8 PP
2K-box105.75.7e-35781744100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +sg s++ea+ + +qqe++kLk++i+++q+++Rh+lGe L+sLslk+L++Le +Le++++k+R+kKne l++++e +qk+e elq++n++L++++
  XP_023512279.1  78 NSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLQAQI 172
                     566669****************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_023512279.1 173 AE 174
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN  60
SVRGTIERYK KAFADSSNSG LSVAEANVQF YQQEASKLKR QIREIQNSNR HILGEALSSL  120
SLKDLKSLEG RLERGISKVR AKKNETLCAE MEFMQKREME LQNHNNYLQA QIAEHERIQQ  180
QQQTNMMQRG TYETVGGGQY EENRSYGGVG LMDSDTHYAH QDHLTLLGYM LDPNYKFTGC  240
IVKYRNNSCP EFILEFGISI QHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.14e-96MIKC_MADS family protein