PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512292.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 576aa MW: 65758.8 Da PI: 10.0176

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	10	63	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 ++W t E++ll+ av+++G+ +W+++a ++ +t+ +c++++++++ XP_023512292.1 10 KPWGTLEELLLASAVNRHGTSSWDSVAIELHnrtsqspSSLTPQDCRNKFYDLK 63 58***************************9999999999*******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MVNQRQTNPK PWGTLEELLL ASAVNRHGTS SWDSVAIELH NRTSQSPSSL TPQDCRNKFY 60 DLKRRFLTQN LHDSDSSSLL PMLDELRKIR VEELRRDVQR RDVLIVSLEM KVKRLEEERN 120 PSFHEPHGGP DPDADAEKTN LRPQNPAASE DDSDNRKNIR SPNESNSTSK KYDVRQNGVV 180 QENPIPESVK ISKITGTGPP RTGDKPGRKW SFNGAAAEPE PEREKNWVAG GGHKERNWRS 240 SRRSQTAVGD SNEAWESVSE SKQEGREGAV SKQQSSDVQS SGSLSQRKRC RNSSGEEPEV 300 SPAKPKPKPS AVKSEALLKF LEIIRSHRLG SAFERRVRSQ ESDRYKNLIR QHIDLRTIRA 360 RVVKGAYADS FHPFFRDLLL LFNNAIIFFH ATSPENDAAV KLRALVLEEM NDKARKPQPT 420 KPCTTAMVGC RKSDSVAAVW DVGGKKAEKS SREIKGKWEV GDCVEIKIYE KGRWKKGLNG 480 RKKNGEVKHE YGGNELSSHD GMEVGMEKKE RVRKKKMKMK KKKKKQGAVR FLKRMRQNCC 540 ESLKEEEEEE DEDEEDEEDF KHNWKFHSFL LNRDGN

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MVNQRQTNPK PWGTLEELLL ASAVNRHGTS SWDSVAIELH NRTSQSPSSL TPQDCRNKFY  60
DLKRRFLTQN LHDSDSSSLL PMLDELRKIR VEELRRDVQR RDVLIVSLEM KVKRLEEERN  120
PSFHEPHGGP DPDADAEKTN LRPQNPAASE DDSDNRKNIR SPNESNSTSK KYDVRQNGVV  180
QENPIPESVK ISKITGTGPP RTGDKPGRKW SFNGAAAEPE PEREKNWVAG GGHKERNWRS  240
SRRSQTAVGD SNEAWESVSE SKQEGREGAV SKQQSSDVQS SGSLSQRKRC RNSSGEEPEV  300
SPAKPKPKPS AVKSEALLKF LEIIRSHRLG SAFERRVRSQ ESDRYKNLIR QHIDLRTIRA  360
RVVKGAYADS FHPFFRDLLL LFNNAIIFFH ATSPENDAAV KLRALVLEEM NDKARKPQPT  420
KPCTTAMVGC RKSDSVAAVW DVGGKKAEKS SREIKGKWEV GDCVEIKIYE KGRWKKGLNG  480
RKKNGEVKHE YGGNELSSHD GMEVGMEKKE RVRKKKMKMK KKKKKQGAVR FLKRMRQNCC  540
ESLKEEEEEE DEDEEDEEDF KHNWKFHSFL LNRDGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	483	KGRWKKGLNGRKK
2	513	524	RKKKMKMKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	7e-24	MYB_related family protein