PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512345.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 492aa MW: 56774.3 Da PI: 6.1303

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.5	2.1e-29	42	126	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e++aL+++r++m++++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ ++ ++++yf+qlea XP_023512345.1 42 RWPREETMALLKVRSRMDSAFRDSSIKAPLWEEVSRKLAEIGYNRSAKKCKEKFENIYKYHKRTKDGRSSK--PNGKNYRYFEQLEA 126 8******************************************************************95..66679*****85 PP
2	trihelix	96.6	2.2e-30	322	407	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi+++++++ +++++ k+plWee+s +m++ g+ r++k+Ckekwen+nk++kk+ke++kkr +e+s+tc+yf+ql+a XP_023512345.1 322 RWPKDEIDALIQLKTNLQIKYQENGPKGPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCSYFQQLDA 407 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MREISPSPEI STAVVSRASE DDGVAASAGL EEEADRNWTG NRWPREETMA LLKVRSRMDS 60 AFRDSSIKAP LWEEVSRKLA EIGYNRSAKK CKEKFENIYK YHKRTKDGRS SKPNGKNYRY 120 FEQLEALDNH PLLPSQADSK EEIPNKIVHN AIPYSIVNPD SNFVETTTTL ISMSTTSCSS 180 KESGGTTKKK EKKRKFVEFF GRLMKEVIEK QEKLQKKFVE VLEKCEEERL AREEEWKMQE 240 LARIKNERER FNHQRSIAAA KDAAVLSFLK AFSEQVGTVQ FPESLILMEN LTGREDHSNV 300 DRITSTRENG NDGNSNQITS SRWPKDEIDA LIQLKTNLQI KYQENGPKGP LWEEISLAMK 360 KLGYDRNAKR CKEKWENINK YFKKVKESNK KRPEDSKTCS YFQQLDALYK QKSKKVVDNH 420 PNHELKPEEL LMHMMGSQEE GHQPESATDD GKAENADQNQ EDDDDDDNDN NDKDEYYYIV 480 ANNNSNQVEV GT

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MREISPSPEI STAVVSRASE DDGVAASAGL EEEADRNWTG NRWPREETMA LLKVRSRMDS  60
AFRDSSIKAP LWEEVSRKLA EIGYNRSAKK CKEKFENIYK YHKRTKDGRS SKPNGKNYRY  120
FEQLEALDNH PLLPSQADSK EEIPNKIVHN AIPYSIVNPD SNFVETTTTL ISMSTTSCSS  180
KESGGTTKKK EKKRKFVEFF GRLMKEVIEK QEKLQKKFVE VLEKCEEERL AREEEWKMQE  240
LARIKNERER FNHQRSIAAA KDAAVLSFLK AFSEQVGTVQ FPESLILMEN LTGREDHSNV  300
DRITSTRENG NDGNSNQITS SRWPKDEIDA LIQLKTNLQI KYQENGPKGP LWEEISLAMK  360
KLGYDRNAKR CKEKWENINK YFKKVKESNK KRPEDSKTCS YFQQLDALYK QKSKKVVDNH  420
PNHELKPEEL LMHMMGSQEE GHQPESATDD GKAENADQNQ EDDDDDDNDN NDKDEYYYIV  480
ANNNSNQVEV GT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-115	Trihelix family protein