PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512369.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 336aa    MW: 39042.3 Da    PI: 6.9826
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-171152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+  r++tf kR++ +l KA+ELS+LCd++++v +++++ 
  XP_023512369.1 11 IGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRACVFVYGPNH 52
                    78999**********************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGRGKLSMQL IGNEKSRKTT FLKRKKSLLR KAYELSTLCD VRACVFVYGP NHNDQSPVEL  60
NTWPPCREEV NNMIASYKAN CLHKRARKAF DLLDFFSERK KKLENDMSKL RKDVLEARFP  120
KWDERLDHLT EDQLRILMVK LDSKLDTMKR RIEIVTENHE EGTSGENNQT LIANMKPEQV  180
MSYGEQSYEM FGNPSMETQP MMPFHHQYHQ QLQTMAQNRQ MDHELENLSQ ILFGSNGSSA  240
QIQSNYGNNC FQNPNFYTDP TNGMVMDNTQ SYSMCHYGVP RATQSVLPVS YMPLIDDQMM  300
MACALNTQMG LANTSAQVND QFDCFNYEYF MKPNNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-22M-type_MADS family protein