PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512861.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 235aa MW: 27100.2 Da PI: 6.7711

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEde+l +v+++G+ W+ + g++R++k+c++rw++yl XP_023512861.1 14 RGAWSFEEDEKLRAYVQRYGPSKWRELPTLAGLTRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	56.9	4.9e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE +l+ +++k++G++ W+tIa++++ gRt++++k++w+ + XP_023512861.1 67 RGNYTDEENDLICNLHKKHGNR-WATIAAKLP-GRTDNEIKNHWNAH 111 899*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MVRAPVVDKD GVRRGAWSFE EDEKLRAYVQ RYGPSKWREL PTLAGLTRCG KSCRLRWLNY 60 LRPGIKRGNY TDEENDLICN LHKKHGNRWA TIAAKLPGRT DNEIKNHWNA HLKKQVKPKP 120 QSSTQPKPKQ LTSQVIEAKR EDFTGYSSTT FGILESSSLS QQTSSCDDNF ATQNWGVEDY 180 DRSGYYQDFW TEQCVSDVLD GCLEFSADYE IGIFSPQHHE PTYDDNYIDL FCSLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12820.1	2e-49	MYB family protein