PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512931.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 405aa    MW: 46157.3 Da    PI: 6.5832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-1636119695
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + ++ l+ + l +p+kfa+++  +   s  +tl  ++g +W ++l  +++++++++++GW +Fvk + +++g  +vF+++g+s f+  + 
  XP_023512931.1  36 VVPSILQDKKLKIPNKFAKKFADD--LSDLVTLVVPNGHRWVLEL--KRHGRSMWFEDGWHDFVKHHCIQVGQLLVFRFEGNSVFN--FY 119
                     3455566677***********877..7789***************..*********************************999994..44 PP
2B368.59.5e-22307397498
                     E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     v+ +s+v +   l +p kfae++ +g+   s ++tl+ +sg++W+v++   + + ++ lt+GW +Fv +n+Lke D++vF+l++ + + l+v++f
  XP_023512931.1 307 VMRQSYVRRGFHLHIPSKFAEKYlKGV---SGDITLQVSSGKQWRVRC--IREGPGTKLTRGWADFVVENDLKEEDVCVFELIDIKATALKVTIF 396
                     57899******************7666...348***************..67777789************************9889999*****9 PP

                     - CS
              B3  98 r 98 
                     r
  XP_023512931.1 397 R 397
                     8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MENSVTAIVE SDEQEGAQSF NESSPVKRAG LFYKLVVPSI LQDKKLKIPN KFAKKFADDL  60
SDLVTLVVPN GHRWVLELKR HGRSMWFEDG WHDFVKHHCI QVGQLLVFRF EGNSVFNFYM  120
FNLTAISNGP CNTSNASSEQ NDGEQCPVTL GKEAEYKKLV EIFGTSSPDP SPRPSVKNAL  180
CGFSDQQKFN GSCNGTSIKN FMHWFDTENV HPLKDLDKLQ LLKSNQDIGI QFDGDELAKA  240
RENFDFEFSD ETNERARKKK LKVEPIDYYN DNEPIVEENC GNIPHKISRM ACGVEEFKPG  300
NPFCWIVMRQ SYVRRGFHLH IPSKFAEKYL KGVSGDITLQ VSSGKQWRVR CIREGPGTKL  360
TRGWADFVVE NDLKEEDVCV FELIDIKATA LKVTIFRVHD DPTKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-61B3 family protein