PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512939.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 232aa MW: 26515.8 Da PI: 9.3008

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll +v+++G ++W+ I + ++ gR++k+c++rw++ XP_023512939.1 12 KGPWSPEEDQLLRILVQRYGARNWSVIGQSIQ-GRSGKSCRLRWFNQ 57 79****************************.*********996 PP
2	Myb_DNA-binding	63.4	4.5e-20	64	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEde +v+a++++G++ W+tIar ++ gRt++ +k++w++ XP_023512939.1 64 RQAFTAEEDEVIVEAHAKHGNK-WATIARLLN-GRTDNAIKNHWNST 108 899*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MTSEEWDIDR VKGPWSPEED QLLRILVQRY GARNWSVIGQ SIQGRSGKSC RLRWFNQLCP 60 DVERQAFTAE EDEVIVEAHA KHGNKWATIA RLLNGRTDNA IKNHWNSTLK RKFSSIAEIK 120 TECMSHGSTI SIGNQCLSPS RSDTNDSIPS QNKRPSTRLS LSLPGTESSP PRPQQQSISS 180 LPEDREAKAK SARCGKEFLS VMQLMIREEV RNYIAEYRKR QRMNEEEDRK AG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-60	MYB family protein