PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512964.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 297aa    MW: 33062 Da    PI: 9.9211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-072570245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      rWT  E +l+ +a + + ++   +W ++a++++ g+t  +++  + 
   XP_023512964.1 25 SRWTVAENKLFENALAIFDTDtpdRWQKVAAMIP-GKTVGDVIRQYK 70
                     69********************************.****99998876 PP
2Myb_DNA-binding48.22.4e-15132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_023512964.1 132 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 176
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MKWEMEILSP PVSSMSWSSG DGLSSRWTVA ENKLFENALA IFDTDTPDRW QKVAAMIPGK  60
TVGDVIRQYK ELEADVSSIE AGLIPIPGYD TSQFTLDWVS SHSYDGFKQS YGLIGKRSSG  120
RSADQERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VVTRTPTQVA SHAQKYFIRQ  180
LSGGKDKRRA SIHDITTVNL NDTRSPSPEN KKSLSPDHAG VLSRHSNPSS TVPRNPFNWN  240
HHQQQQQHNA GGAAMVFNHS HGNVFMSPGA FGVNSYVGVR LPDHNLQKDS VLGGQGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-100MYB_related family protein