PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513154.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 318aa MW: 35137.1 Da PI: 8.9477

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.7e-06	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H XP_023513154.1 45 FVCEICGKGFQRDQNLQLHRRGH 67 89*******************88 PP
2	zf-C2H2	15.2	5.9e-05	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+ks+ +s+ k H +t+ XP_023513154.1 121 WKCEKCSKSYAVQSDWKAHSKTC 143 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MISKMAADGS NPSLGKKKRS LPGTPDPEAE VIALSPKTLM ATKRFVCEIC GKGFQRDQNL 60 QLHRRGHNLP WKLKQRSNKE AKKRVYVCPE TSCVHHHPSR ALGDLTGIKK HFCRKHGEKK 120 WKCEKCSKSY AVQSDWKAHS KTCGTREYKC DCGTLFSRRD SFISHRAFCD ALAEEAARVS 180 NAMAQHWVMY CDPVCQNPAV GDYYSRQLQE VNQTHMGTMS ATALLQKAAE IGAISSSGHS 240 VILEEGFVFN NGSEFCNSGT TNPIVVIGNE NEMYTAKRRC TQSEVECGAT GAAGLTRDFL 300 GVGAQTICHS SPTIKGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-104	C2H2 family protein