PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513279.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 416aa MW: 47200.9 Da PI: 8.1107

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.5	2.3e-20	64	158	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt qe++ Li+a++ ++er ++ + +W++v ++++++g++rs++qC++kw+nl ++ykk+++ e++ ++++s++p + ++ XP_023513279.1 64 WTLQETMILITAKKLDDERRNKVTlapptdptarkGGELRWKWVENYCWSHGCHRSQNQCNDKWDNLLRDYKKVRDYESRA-CDQQSQIPSYWKM 157 ************9999999863444444554447899************************************85.99999****** PP trihelix 86 e 86 e XP_023513279.1 158 E 158 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MSDPPTTSSE PPHQQQQQHP HHYHHQQQQL LHLPLIHGGG ARINTAAANS SSTVIVREYR 60 KGNWTLQETM ILITAKKLDD ERRNKVTLAP PTDPTARKGG ELRWKWVENY CWSHGCHRSQ 120 NQCNDKWDNL LRDYKKVRDY ESRACDQQSQ IPSYWKMEKH ERKDNNLPSN MAFEVYQALN 180 DVVHRKFSQR PLISNTTPTT TTTTTTTTTT PTTPLVALPP APPPSSTVPA LPPPPPTTAT 240 NSSPAVSESS SSGTESSEKK EKTKAKRRKM EDNIVRSATM LAQTLRSCEE QREIRHQEVM 300 EVQKRCLQIE EARNHIHRQG ISDVVAAIAN LSAEIDDRER RRRSEGYECS YNGEEVRMLK 360 EQNEAMQAEV MNVKTELSQL RDQMPSLMQT MMHNMLHNIP PPPPPSMDPS GSGGDA

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MSDPPTTSSE PPHQQQQQHP HHYHHQQQQL LHLPLIHGGG ARINTAAANS SSTVIVREYR  60
KGNWTLQETM ILITAKKLDD ERRNKVTLAP PTDPTARKGG ELRWKWVENY CWSHGCHRSQ  120
NQCNDKWDNL LRDYKKVRDY ESRACDQQSQ IPSYWKMEKH ERKDNNLPSN MAFEVYQALN  180
DVVHRKFSQR PLISNTTPTT TTTTTTTTTT PTTPLVALPP APPPSSTVPA LPPPPPTTAT  240
NSSPAVSESS SSGTESSEKK EKTKAKRRKM EDNIVRSATM LAQTLRSCEE QREIRHQEVM  300
EVQKRCLQIE EARNHIHRQG ISDVVAAIAN LSAEIDDRER RRRSEGYECS YNGEEVRMLK  360
EQNEAMQAEV MNVKTELSQL RDQMPSLMQT MMHNMLHNIP PPPPPSMDPS GSGGDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-47	Trihelix family protein