PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513290.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 296aa    MW: 33145.1 Da    PI: 6.869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513290.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  +    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_023513290.1 16 KGLWSPEEDDKLMTYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding506.6e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k++w++
   XP_023513290.1  69 RGAFSPQEERLIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 112
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MRKPDPAAAR TTKLRKGLWS PEEDDKLMTY MLNNGQGCWS DVARNAGLQR CGKSCRLRWI  60
NYLHPDLKRG AFSPQEERLI IHLHSLLGNR WSQIAARLPG RTDNEIKNFW NSTIKKRLKN  120
LSSTPSPNTS SAASPSDNSK SIPFGGLLST QDYQQQQQGL IDYPIYASDP SPSIIALDPF  180
PAFTADAEPG FFLEHDSFFN NLPVLQRVNT TTVVTTATTA ATTLAKEANH GNYLISNINC  240
LANHNNNSNN NPKMENINGE VGTNFVHEEF SIGEWELEDL MKDVPSCFPY LNFQVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.18e-71MYB family protein