PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513294.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 574aa MW: 63811.7 Da PI: 7.0238

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45	2.7e-14	170	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_023513294.1 170 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 229 57*****************666664477446******99***********98 PP
2	AP2	47	6.3e-15	274	323	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_023513294.1 274 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 323 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MGSMNSNNWL SFPLSPTNPS LPPHLQTPTH AHHFSLGNLE NDNMDIPFQT HGEVPKVADF 60 LGVSKAENEA DLIGFNQIHE ANDTDYLFPI TRLVPLQQHP TPAASPINMD STTNYDPQDN 120 SNSLQSLTLS MGSGKPSTCE TSSTPDNANN NTTLDVTPRR TLDTFGQRTS IYRGVTRHRW 180 TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT STTTNFPISN 240 YEKEVEEMKH MTRQEFVASI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY 300 LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESNTLPIGG GAAKRLKEAQ 360 AIESSRKRDE MIALGSSSSF QYGSSSSSSN SSNHRLQQQP QQPSYPLLQQ PNLNMDHHHH 420 HHHHHLQTQP FLSLQNHHDI SQYTNDPSSF HHSSTYMHTQ LQLHHHQSDN APYPNNNNNN 480 NNHQFYGGAG GGYLHNHPGL LHGMITNNNS NGGYLGNAFG MGSTSATANN GAPAEEYALV 540 KVDYDMPPNA GGYGSWSGDS VQGSNPGVFS MWND

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MGSMNSNNWL SFPLSPTNPS LPPHLQTPTH AHHFSLGNLE NDNMDIPFQT HGEVPKVADF  60
LGVSKAENEA DLIGFNQIHE ANDTDYLFPI TRLVPLQQHP TPAASPINMD STTNYDPQDN  120
SNSLQSLTLS MGSGKPSTCE TSSTPDNANN NTTLDVTPRR TLDTFGQRTS IYRGVTRHRW  180
TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT STTTNFPISN  240
YEKEVEEMKH MTRQEFVASI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY  300
LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESNTLPIGG GAAKRLKEAQ  360
AIESSRKRDE MIALGSSSSF QYGSSSSSSN SSNHRLQQQP QQPSYPLLQQ PNLNMDHHHH  420
HHHHHLQTQP FLSLQNHHDI SQYTNDPSSF HHSSTYMHTQ LQLHHHQSDN APYPNNNNNN  480
NNHQFYGGAG GGYLHNHPGL LHGMITNNNS NGGYLGNAFG MGSTSATANN GAPAEEYALV  540
KVDYDMPPNA GGYGSWSGDS VQGSNPGVFS MWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein