PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513681.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 251aa MW: 25390.6 Da PI: 7.5024

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.4	1.8e-41	33	134	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael XP_023513681.1 33 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPLHKRPDAVVTICYEAQARLRDPVYGCVSHIFALQQQVVSLQAEL 127 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 ++l+++l XP_023513681.1 128 SYLQAQL 134 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MSANPSTSGG GSGGGGGGVG LGSGSGSGGG GGPCGACKFL RRKCVPGCIF APYFDSEQGA 60 AHFAAVHKVF GASNVSKLLL HIPLHKRPDA VVTICYEAQA RLRDPVYGCV SHIFALQQQV 120 VSLQAELSYL QAQLASLELP SPPNPPPPPP PPSFQGLPPL SISDLPSPPS LPATYDLSSL 180 FDPMAQPAWV LPQQRLDPRQ FTGGGGGGGG GSSGLSTVAG EGDLQALARE LLHRHGAPPS 240 SDSSSPPSVS K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	5e-69	LBD family protein