PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513859.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 713aa MW: 78124.8 Da PI: 10.4617

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	15	64	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45 W t+E++ll+ av ++G ++W+++a +++ t+ +c ++++ XP_023513859.1 15 TWGTWEELLLASAVMRHGFKDWNSVAMEVQarsslphPLTTASNCELKFL 64 5*****************************66666665556666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MAEDKERESG QSIATWGTWE ELLLASAVMR HGFKDWNSVA MEVQARSSLP HPLTTASNCE 60 LKFLDLKRRF TSFQNDAVLN ENGAGITDNV DSAVPWVDEL RKLRVAELRR EVQNYDVSIN 120 SLQLKVKRLE EERDQGLNDS EAGTGKPDLK TEARERRSEN DKKLFGEPDH RSGSKGTVVK 180 PAAVPGEDSD REDFSVNQSN STGSKSGNRK STAENTKSET KPEFTGSCRP EPNRRAAELA 240 GPQSDDGSTD TVVKNPTCDT SGTTKKKKET KRVDDSSELA DSEAESNGGE TATRESSEVQ 300 SSASLTGRMK RRRFLRKEIS GGSSGNEPRR TVAVKSRRFD EVLQMIRSHK HGSLFESRLQ 360 SQETEEYKGM IRQHLDLETV QAKLNSGSYP SSSLAFYRDL LLLCNNAVTF FPNSSKEYVA 420 ARELRLLVSY EMKKSMPVAR ADPSPGGSSP PNPSSQSKGP PDLEGSQSLP AKRKSHVPIV 480 VCRKRSKISS KLSSSGLGEK SDRTNDDEKL ALDLKSSVKM ASTVVEDHGT TKDSSSKIKE 540 RSITGARSMR RSNDSATNSS GPSIKKQTTN SGWKPNSANE TETPTPDNKK SETVALEKKR 600 SAADFLKRIK QNSPAETTKR NGRGGSSNKS NATAAAGEQK KGSGKNGGKE KASSIRQSNE 660 KKRLKEDPSP SKRSVGRPPK KAVEANPNPA PTKRAREGGG KEPLKRARKR ARR

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MAEDKERESG QSIATWGTWE ELLLASAVMR HGFKDWNSVA MEVQARSSLP HPLTTASNCE  60
LKFLDLKRRF TSFQNDAVLN ENGAGITDNV DSAVPWVDEL RKLRVAELRR EVQNYDVSIN  120
SLQLKVKRLE EERDQGLNDS EAGTGKPDLK TEARERRSEN DKKLFGEPDH RSGSKGTVVK  180
PAAVPGEDSD REDFSVNQSN STGSKSGNRK STAENTKSET KPEFTGSCRP EPNRRAAELA  240
GPQSDDGSTD TVVKNPTCDT SGTTKKKKET KRVDDSSELA DSEAESNGGE TATRESSEVQ  300
SSASLTGRMK RRRFLRKEIS GGSSGNEPRR TVAVKSRRFD EVLQMIRSHK HGSLFESRLQ  360
SQETEEYKGM IRQHLDLETV QAKLNSGSYP SSSLAFYRDL LLLCNNAVTF FPNSSKEYVA  420
ARELRLLVSY EMKKSMPVAR ADPSPGGSSP PNPSSQSKGP PDLEGSQSLP AKRKSHVPIV  480
VCRKRSKISS KLSSSGLGEK SDRTNDDEKL ALDLKSSVKM ASTVVEDHGT TKDSSSKIKE  540
RSITGARSMR RSNDSATNSS GPSIKKQTTN SGWKPNSANE TETPTPDNKK SETVALEKKR  600
SAADFLKRIK QNSPAETTKR NGRGGSSNKS NATAAAGEQK KGSGKNGGKE KASSIRQSNE  660
KKRLKEDPSP SKRSVGRPPK KAVEANPNPA PTKRAREGGG KEPLKRARKR ARR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	472	476	KRKSH
2	705	713	KRARKRARR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-98	MYB_related family protein