PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514162.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 609aa MW: 67097.2 Da PI: 5.4545

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	492	540	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_023514162.1 492 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 540 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MGTVVGFVEN EGKIVDSGIL QDVSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE 60 DLLEDDKSEK VEDAGQIVEC VPTEGTLFGK PHVEISNGLP QSEGDAGYTA RLEYIEEVLQ 120 KVKQEERLRL ACGSLNYPSA YVDGDRKGSD QHGRLPVTDE KFQSQISLQE ISHCSSSLNE 180 NHGNEHGSLA NFLKHPDKSV ESESSDAICT TSKPDFSMLK GDICLDNLSI RELHECFKAT 240 FGRDTTVKDK SWLKRRIAMG LTNSCDIPAS SFIIKEGKFV EESSQNVVGV STVPTAEALN 300 IECSGSPTTY CLETKDHHHV EEIELDHGIE DQHEERAAVK RIRKPTRRYI EELSEVESRE 360 YVPKVISLSK SSVSDGVSAN SIQRPSKKVC SDRGRTVITR LDSLGGSGVQ VPCVSRVRRS 420 RPRKDIVALV FTLPEKDQNP SVKDTNTNEV EEKNLEEKNL EEKPTDSGNA SDDNAIIVPT 480 PKGGSRRKHH RAWTLVEVIK LVEGVSICGA GRWSEIKKLS FSSYSYRTSV DLKDKWRNLL 540 KASFAQTPVG EGMSSRKHVS VSIPEQILLQ VRELAEMHAQ IPPSNHGQGK LGGVSSGTNI 600 HEISPAVCL

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MGTVVGFVEN EGKIVDSGIL QDVSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE  60
DLLEDDKSEK VEDAGQIVEC VPTEGTLFGK PHVEISNGLP QSEGDAGYTA RLEYIEEVLQ  120
KVKQEERLRL ACGSLNYPSA YVDGDRKGSD QHGRLPVTDE KFQSQISLQE ISHCSSSLNE  180
NHGNEHGSLA NFLKHPDKSV ESESSDAICT TSKPDFSMLK GDICLDNLSI RELHECFKAT  240
FGRDTTVKDK SWLKRRIAMG LTNSCDIPAS SFIIKEGKFV EESSQNVVGV STVPTAEALN  300
IECSGSPTTY CLETKDHHHV EEIELDHGIE DQHEERAAVK RIRKPTRRYI EELSEVESRE  360
YVPKVISLSK SSVSDGVSAN SIQRPSKKVC SDRGRTVITR LDSLGGSGVQ VPCVSRVRRS  420
RPRKDIVALV FTLPEKDQNP SVKDTNTNEV EEKNLEEKNL EEKPTDSGNA SDDNAIIVPT  480
PKGGSRRKHH RAWTLVEVIK LVEGVSICGA GRWSEIKKLS FSSYSYRTSV DLKDKWRNLL  540
KASFAQTPVG EGMSSRKHVS VSIPEQILLQ VRELAEMHAQ IPPSNHGQGK LGGVSSGTNI  600
HEISPAVCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	418	424	RRSRPRK
2	418	425	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-55	MYB_related family protein