PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514164.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 570aa MW: 62985.6 Da PI: 5.7476

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	453	501	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_023514164.1 453 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 501 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MKVDGDGRFV PATDDEVMEV EDLLEDDKSE KVEDAGQIVE CVPTEGTLFG KPHVEISNGL 60 PQSEGDAGYT ARLEYIEEVL QKVKQEERLR LACGSLNYPS AYVDGDRKGS DQHGRLPVTD 120 EKFQSQISLQ EISHCSSSLN ENHGNEHGSL ANFLKHPDKS VESESSDAIC TTSKPDFSML 180 KGDICLDNLS IRELHECFKA TFGRDTTVKD KSWLKRRIAM GLTNSCDIPA SSFIIKEGKF 240 VEESSQNVVG VSTVPTAEAL NIECSGSPTT YCLETKDHHH VEEIELDHGI EDQHEERAAV 300 KRIRKPTRRY IEELSEVESR EYVPKVISLS KSSVSDGVSA NSIQRPSKKV CSDRGRTVIT 360 RLDSLGGSGV QVPCVSRVRR SRPRKDIVAL VFTLPEKDQN PSVKDTNTNE VEEKNLEEKN 420 LEEKPTDSGN ASDDNAIIVP TPKGGSRRKH HRAWTLVEVI KLVEGVSICG AGRWSEIKKL 480 SFSSYSYRTS VDLKDKWRNL LKASFAQTPV GEGMSSRKHV SVSIPEQILL QVRELAEMHA 540 QIPPSNHGQG KLGGVSSGTN IHEISPAVCL

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MKVDGDGRFV PATDDEVMEV EDLLEDDKSE KVEDAGQIVE CVPTEGTLFG KPHVEISNGL  60
PQSEGDAGYT ARLEYIEEVL QKVKQEERLR LACGSLNYPS AYVDGDRKGS DQHGRLPVTD  120
EKFQSQISLQ EISHCSSSLN ENHGNEHGSL ANFLKHPDKS VESESSDAIC TTSKPDFSML  180
KGDICLDNLS IRELHECFKA TFGRDTTVKD KSWLKRRIAM GLTNSCDIPA SSFIIKEGKF  240
VEESSQNVVG VSTVPTAEAL NIECSGSPTT YCLETKDHHH VEEIELDHGI EDQHEERAAV  300
KRIRKPTRRY IEELSEVESR EYVPKVISLS KSSVSDGVSA NSIQRPSKKV CSDRGRTVIT  360
RLDSLGGSGV QVPCVSRVRR SRPRKDIVAL VFTLPEKDQN PSVKDTNTNE VEEKNLEEKN  420
LEEKPTDSGN ASDDNAIIVP TPKGGSRRKH HRAWTLVEVI KLVEGVSICG AGRWSEIKKL  480
SFSSYSYRTS VDLKDKWRNL LKASFAQTPV GEGMSSRKHV SVSIPEQILL QVRELAEMHA  540
QIPPSNHGQG KLGGVSSGTN IHEISPAVCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	385	RRSRPRK
2	379	386	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-44	MYB_related family protein