PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514165.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 553aa MW: 61152.6 Da PI: 6.0567

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	436	484	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v G g+W+ I + Rt ++k++w+++l XP_023514165.1 436 AWTLVEVIKLVEGVSICGAGRWSEIKKLSFssySYRTSVDLKDKWRNLL 484 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MEVEDLLEDD KSEKVEDAGQ IVECVPTEGT LFGKPHVEIS NGLPQSEGDA GYTARLEYIE 60 EVLQKVKQEE RLRLACGSLN YPSAYVDGDR KGSDQHGRLP VTDEKFQSQI SLQEISHCSS 120 SLNENHGNEH GSLANFLKHP DKSVESESSD AICTTSKPDF SMLKGDICLD NLSIRELHEC 180 FKATFGRDTT VKDKSWLKRR IAMGLTNSCD IPASSFIIKE GKFVEESSQN VVGVSTVPTA 240 EALNIECSGS PTTYCLETKD HHHVEEIELD HGIEDQHEER AAVKRIRKPT RRYIEELSEV 300 ESREYVPKVI SLSKSSVSDG VSANSIQRPS KKVCSDRGRT VITRLDSLGG SGVQVPCVSR 360 VRRSRPRKDI VALVFTLPEK DQNPSVKDTN TNEVEEKNLE EKNLEEKPTD SGNASDDNAI 420 IVPTPKGGSR RKHHRAWTLV EVIKLVEGVS ICGAGRWSEI KKLSFSSYSY RTSVDLKDKW 480 RNLLKASFAQ TPVGEGMSSR KHVSVSIPEQ ILLQVRELAE MHAQIPPSNH GQGKLGGVSS 540 GTNIHEISPA VCL

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MEVEDLLEDD KSEKVEDAGQ IVECVPTEGT LFGKPHVEIS NGLPQSEGDA GYTARLEYIE  60
EVLQKVKQEE RLRLACGSLN YPSAYVDGDR KGSDQHGRLP VTDEKFQSQI SLQEISHCSS  120
SLNENHGNEH GSLANFLKHP DKSVESESSD AICTTSKPDF SMLKGDICLD NLSIRELHEC  180
FKATFGRDTT VKDKSWLKRR IAMGLTNSCD IPASSFIIKE GKFVEESSQN VVGVSTVPTA  240
EALNIECSGS PTTYCLETKD HHHVEEIELD HGIEDQHEER AAVKRIRKPT RRYIEELSEV  300
ESREYVPKVI SLSKSSVSDG VSANSIQRPS KKVCSDRGRT VITRLDSLGG SGVQVPCVSR  360
VRRSRPRKDI VALVFTLPEK DQNPSVKDTN TNEVEEKNLE EKNLEEKPTD SGNASDDNAI  420
IVPTPKGGSR RKHHRAWTLV EVIKLVEGVS ICGAGRWSEI KKLSFSSYSY RTSVDLKDKW  480
RNLLKASFAQ TPVGEGMSSR KHVSVSIPEQ ILLQVRELAE MHAQIPPSNH GQGKLGGVSS  540
GTNIHEISPA VCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	368	RRSRPRK
2	362	369	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-44	MYB_related family protein