PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023514168.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 680aa    MW: 76155 Da    PI: 6.321
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023514168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.8e-24125226199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ kk+a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  XP_023514168.1 125 FCKILTASDTSTHGGFSVLKKHATEClppldMSQSTPTQELAAKDLHGHEWKFKHIFRGQPRRHLLTTGWSTFVVSKRLVAGDAFVFL--RGDNG 217
                     99****************************9555555669************************************************..34899 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+v+v+r+
  XP_023514168.1 218 ELRVGVRRQ 226
                     99****996 PP
2Auxin_resp97.42.1e-32251330183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr+  s+F++ ++k+++++k+++ vGmRfkm+fe+e+s+err++Gt+vgv d++p  W++SkWrsLk
  XP_023514168.1 251 ASHAVRTQTFFVVYYKPRT--SQFIIGLNKYLETIKNRYEVGMRFKMRFEGEESPERRFTGTIVGVGDISP-IWSDSKWRSLK 330
                     689***************6..9*************************************************.8********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    
MTLSEQNPAE FRKGLEGEGL FEELWKACAG PLVEVPFNGE RVFYFPQGHM EQLEESTNHE  60
LNHQIPHFDL PSKILCRVVN IRLLAEKETD EVYAQITLQP EADQSEPQCP DPEPPERTRP  120
TVHSFCKILT ASDTSTHGGF SVLKKHATEC LPPLDMSQST PTQELAAKDL HGHEWKFKHI  180
FRGQPRRHLL TTGWSTFVVS KRLVAGDAFV FLRGDNGELR VGVRRQARQQ SLMPSSVISS  240
HSMHLGVLAT ASHAVRTQTF FVVYYKPRTS QFIIGLNKYL ETIKNRYEVG MRFKMRFEGE  300
ESPERRFTGT IVGVGDISPI WSDSKWRSLK IQWDEAAAIQ RPERVSPWEI EPFVPSASLN  360
FTHPSIKSKR ARPVEVPPPE NTSSSTPTGF WLHGSTIPHE IPQLSGANDV PSSGNQVVWS  420
LWQQTLDVNV DSSRSHCNPM AHVEGIWPSP PPPLCNNSLK PLPSPYSPSS TSKPSSELIE  480
HDQSEKGNKP DISLGCRIFG IDLKKNSSIV PSLEKKSCCQ TTVATDIAKD PVPIAAVTSQ  540
ADAGKEQQQV ASELSMKGTQ TNHIPNSSSR TRTKVQMQGV AVGRAVDLTT LKGYEDLIDE  600
LENVFEIKGE LREMNKWSIV FTDDEYDMML VGDDPWPEFC QMVKRIFIYS SEEVKTMSSN  660
SKLVSPPSLD SLDSERKTES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein