PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514717.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 169aa MW: 19598.5 Da PI: 7.4624

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.1	8.2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ nr+vtf+kRr+g++KKA ELSvLCd+ev ++if ++g+lye++s XP_023514717.1 9 KRIEDRCNRHVTFCKRRAGLIKKARELSVLCDVEVGLVIFTNRGRLYEFCS 59 79***********************************************96 PP
2	K-box	16.5	3.5e-07	96	148	24	76
K-box 24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 L + + Lq+ q +++ + ++L+ +L qLe+qL+ l ki+ ++ e ++e XP_023514717.1 96 LVSLGKLLQTIQSQVVEPNFKKLNAIDLLQLENQLQATLHKIKYQRIEAMMED 148 44445667888888999999***************************999975 PP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence
MGRKKIEVKR IEDRCNRHVT FCKRRAGLIK KARELSVLCD VEVGLVIFTN RGRLYEFCSG 60 NSLSNVIKRY QSHLEGRNEN LVDNDTKDHE SDETILVSLG KLLQTIQSQV VEPNFKKLNA 120 IDLLQLENQL QATLHKIKYQ RIEAMMEDDC WTDHMEMAIG MVNSQSFNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	4e-34	MIKC_MADS family protein