PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514779.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 441aa MW: 48125.4 Da PI: 9.1433

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023514779.1 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	11.4	0.00097	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023514779.1 141 WKCDKCSKKYAVQSDWKAHSKIC 163 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MMKGSFLSQQ HQQQLLMDQT LSNLTNPTQF FSPPPPKRKR NLAGNPDAEV IALSPKTLMA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV IKKKVYVCPE PSCVHHDPSR 120 ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTKEYKC DCGTLFSRRD 180 SFITHRAFCD ALADESARSA MTLSPLISNY NNSQELLFKR GFGGGDNSNN DDNNLKTEIP 240 SWLQSDEIFV GSTHQTLNPN PNGLVPPCVS SPHISATALL QKAAQMGATM SSGSMGRTHE 300 MVHVSTGNYG DMGIRSREGG MGVSCSSSSC CTDYGNKAAA VSAAVSATAT PSGPTTFLHD 360 MINSLASASH PFHQDSSAFN AAAFAAMHHH TAAGRSDGLT RDFLGLRPLS HGDILSITGF 420 GNCIVPNSAT LQSQTQKPWQ G

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MMKGSFLSQQ HQQQLLMDQT LSNLTNPTQF FSPPPPKRKR NLAGNPDAEV IALSPKTLMA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV IKKKVYVCPE PSCVHHDPSR  120
ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTKEYKC DCGTLFSRRD  180
SFITHRAFCD ALADESARSA MTLSPLISNY NNSQELLFKR GFGGGDNSNN DDNNLKTEIP  240
SWLQSDEIFV GSTHQTLNPN PNGLVPPCVS SPHISATALL QKAAQMGATM SSGSMGRTHE  300
MVHVSTGNYG DMGIRSREGG MGVSCSSSSC CTDYGNKAAA VSAAVSATAT PSGPTTFLHD  360
MINSLASASH PFHQDSSAFN AAAFAAMHHH TAAGRSDGLT RDFLGLRPLS HGDILSITGF  420
GNCIVPNSAT LQSQTQKPWQ G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-103	C2H2 family protein