PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515038.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 382aa MW: 43706.1 Da PI: 6.6704

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	58	2.1e-18	194	242	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kp+l Wt++LH+ F++a+e L G + + Pk+il+lm+v+gL e+v SHLQ XP_023515038.1 194 KPKLIWTQQLHKTFLQAIEAL-GVD-THPKEILQLMNVPGLRKENVSSHLQ 242 79*****************.777.79********************9 PP
2	Myb_DNA-binding	25.7	2.6e-08	197	242	2	45
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwq 45 + WT+++++ +++a++ lG + ++k I + m+ g+ +++ s++q XP_023515038.1 197 LIWTQQLHKTFLQAIEALGVDtHPKEILQLMNvPGLRKENVSSHLQ 242 56******************************************98 PP
3	Response_reg	57.7	6.7e-20	15	123	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vd + + ++++ ++l gy e+ +a+ + +al+++ke++ ++lil+D +p+m +ell++i e+ ++lpi+++t+ ++e l +l G XP_023515038.1 15 VLVVDHDSTTLKIVSKMLGVCGY-EAVTAKCAIDALRIVKERKndIHLILTDTHLPDMGRYELLEKIMEQTSTLPIVAMTTDDNEIVKLGCLFKG 108 89*******************.9999*******887777******************99999******************* PP ESEEEESS--HHHHH CS Response_reg 94 akdflsKpfdpeelv 108 a+ +l+Kp ++++ XP_023515038.1 109 AMLCLVKPLTMKNIK 123 ******9998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MELTKKWMLY EELRVLVVDH DSTTLKIVSK MLGVCGYEAV TAKCAIDALR IVKERKNDIH 60 LILTDTHLPD MGRYELLEKI MEQTSTLPIV AMTTDDNEIV KLGCLFKGAM LCLVKPLTMK 120 NIKDLWQFLF IGGRERSISI RTSNRVQKES TDENDVDKST DKKSQKTKRK EHDEEEVSTR 180 QVEGDGSEST GPKKPKLIWT QQLHKTFLQA IEALGVDTHP KEILQLMNVP GLRKENVSSH 240 LQFRFSLKRG QDVKKKTFES FETAQIPNHR TKLPINVDIF VAKPQETQPQ LCNNLSSTSI 300 NSNLMGSCDV VSSESCFSKV ITSQTCSMNS TQRRSLEDQE RRQWFECNRK EMTSTMVEEQ 360 GHCMFTVDEE LDGVLDVHDL LF

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MELTKKWMLY EELRVLVVDH DSTTLKIVSK MLGVCGYEAV TAKCAIDALR IVKERKNDIH  60
LILTDTHLPD MGRYELLEKI MEQTSTLPIV AMTTDDNEIV KLGCLFKGAM LCLVKPLTMK  120
NIKDLWQFLF IGGRERSISI RTSNRVQKES TDENDVDKST DKKSQKTKRK EHDEEEVSTR  180
QVEGDGSEST GPKKPKLIWT QQLHKTFLQA IEALGVDTHP KEILQLMNVP GLRKENVSSH  240
LQFRFSLKRG QDVKKKTFES FETAQIPNHR TKLPINVDIF VAKPQETQPQ LCNNLSSTSI  300
NSNLMGSCDV VSSESCFSKV ITSQTCSMNS TQRRSLEDQE RRQWFECNRK EMTSTMVEEQ  360
GHCMFTVDEE LDGVLDVHDL LF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-39	ARR-B family protein