PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515068.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 250aa MW: 28322.7 Da PI: 8.559

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l + v+ +G +W++ ++ g+ R++k+c++rw +yl XP_023515068.1 14 RGPWSPEEDRILTNFVQDHGHSNWRALPKQAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.7	4.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++++lG++ W+tIa++++ gRt++++k+ w+++l XP_023515068.1 67 RGNFTKEEEDVIINLHELLGNR-WSTIAAKLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRAPCCEKM GLKRGPWSPE EDRILTNFVQ DHGHSNWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TKEEEDVIIN LHELLGNRWS TIAAKLPGRT DNEIKNVWHT HLKKRLQKPI 120 KTPPKSKNKT KKQTKSKSSS NYSSPMAITN QTHLPICSSS MSPSQQSSTS EICSSLTTDA 180 SMAENEYYSY TADDTAAPPL IDESFWSDAA ENYNSNSDSS SSYYNEENKD MEFWYNVFVK 240 AGGIPGLPEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-77	MYB family protein