PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515116.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 240aa MW: 28012.6 Da PI: 5.2683

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l++ ++q G +W++ +++ g+ R++k+c++rw +yl XP_023515116.1 17 RGPWSPQEDQILIKFIQQNGHSNWRALPKRAGLLRCGKSCRLRWINYL 64 89****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.2e-15	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T eE+e +++++k+lG++ W+ Ia++++ gRt++++k+ w++ XP_023515116.1 70 RGDFTREEEETIINLHKLLGNR-WSMIAAKLP-GRTDNEIKNVWHT 113 899*****************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MKKMGRAPCC EKVGLKRGPW SPQEDQILIK FIQQNGHSNW RALPKRAGLL RCGKSCRLRW 60 INYLRPDLKR GDFTREEEET IINLHKLLGN RWSMIAAKLP GRTDNEIKNV WHTSLKKRLN 120 QNQTREDHTE LNKNDIPFQD QPPCSSDIKS DGEENVDHCT KNNDDDNDTR LEELAFAKDF 180 LENLFSEEEI FPNNCNMIKN DDQSPKEVEI SSDTVDIMDF WRGVFMKDGE LPELQEINII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-74	MYB family protein