PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515187.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 224aa MW: 25593.3 Da PI: 6.5387

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.8	6.9e-29	11	58	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ien + rqvtfskRrng++KKA+ELSvLCdaev +iifs++gklye++ XP_023515187.1 11 IENATSRQVTFSKRRNGLMKKAFELSVLCDAEVGLIIFSPRGKLYEFA 58 9**********************************************8 PP
2	K-box	77.1	4.5e-26	90	175	15	99
K-box 15 esl.qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e+l ++e+a L k+ie+L+ ++R++lGedL+s+s+ eLqq+e qLeks+ kiR++K e++ eqi++l++kek l+ en +L +k+e XP_023515187.1 90 EHLnHEEAATLMKKIEQLEVSKRKMLGEDLGSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKEKLLEAENAKLLEKWE 175 44415789**************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MVRGKTQMRL IENATSRQVT FSKRRNGLMK KAFELSVLCD AEVGLIIFSP RGKLYEFANS 60 SMQATLERYR KHAKTKEALD PPSVNDIQLE HLNHEEAATL MKKIEQLEVS KRKMLGEDLG 120 SCSIDELQQV ELQLEKSVCK IRARKVEVFE EQIKQLKHKE KLLEAENAKL LEKWESEAEG 180 GVKEVERGEN LTNYAESSSP SSEVETELFI GPPETRPRTF LSLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-70	MIKC_MADS family protein