PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515348.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 391aa MW: 45015.2 Da PI: 4.5345

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.3	2.6e-15	155	239	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+ +L++a e+ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k + + +s+s+++yf++l+ XP_023515348.1 155 WNEHETVVLLDAWGERFLQHGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKSKSTEL-GGSTSKWVYFKKLD 239 ***********************************762678*********************996.88999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MDDDNGEERY PLSKRYSGNH RESYSSVPRP KIPLRDAPYS RPVSNQYVDD DVEDDDEEDE 60 GLGEEDDEND QNNGFAHTSD EVDDGDDEDD YDMDEDDKQN STVKRDDADL ERHPKKRRLK 120 SLASSYELAP RVPAPSSVTP AQRLFVGGRN SLMDWNEHET VVLLDAWGER FLQHGRKSLR 180 SEEWQEVAEK VSEVSKIERT DTQCRNRLDT LKKKYKKEKS KSTELGGSTS KWVYFKKLDM 240 LMSSPPNQGG LSCGLDSGEY VFMNPRAYLN RANGFDEMRD SPENSESDDG EDDELDGLPP 300 KKRMYGRNRC DGTSFRMLAN SIHKFSEIYE KIESSKRHQM MELEKMRMDF LRDLELQKRH 360 IMERAQAEIA KLRQGDDDDG DYGAPAKSTN G

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MDDDNGEERY PLSKRYSGNH RESYSSVPRP KIPLRDAPYS RPVSNQYVDD DVEDDDEEDE  60
GLGEEDDEND QNNGFAHTSD EVDDGDDEDD YDMDEDDKQN STVKRDDADL ERHPKKRRLK  120
SLASSYELAP RVPAPSSVTP AQRLFVGGRN SLMDWNEHET VVLLDAWGER FLQHGRKSLR  180
SEEWQEVAEK VSEVSKIERT DTQCRNRLDT LKKKYKKEKS KSTELGGSTS KWVYFKKLDM  240
LMSSPPNQGG LSCGLDSGEY VFMNPRAYLN RANGFDEMRD SPENSESDDG EDDELDGLPP  300
KKRMYGRNRC DGTSFRMLAN SIHKFSEIYE KIESSKRHQM MELEKMRMDF LRDLELQKRH  360
IMERAQAEIA KLRQGDDDDG DYGAPAKSTN G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	KKRRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	9e-68	Trihelix family protein