PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515354.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 183aa    MW: 19833.5 Da    PI: 6.2161
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.87.7e-38111111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyfp++  +++f +vhk+FGasn +kll++lp ++r+ a+ ++ yeA+ar++dP+yG+++ i++lq+q+ +l+a++
  XP_023515354.1  11 PCGACKFLRRKCVNGCIFAPYFPHDLgASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQV 105
                     7************************989******************************************************************* PP

          DUF260  95 allkee 100
                     a+l+e+
  XP_023515354.1 106 AYLREQ 111
                     *99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MAASSSSSSP PCGACKFLRR KCVNGCIFAP YFPHDLGASH FSAVHKVFGA SNASKLLAHL  60
PVSHRSLAAV TISYEAQARL QDPIYGCISQ IFALQHQVVN LRAQVAYLRE QAAQIILNGY  120
ITRNPNELLY GNSLSYSDEE LLDLQTWLLE ESCSTAAPEF EPTAGPYVQM GVADSNLAGD  180
FCC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-58LBD family protein