PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515588.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 178aa    MW: 19550.2 Da    PI: 8.7677
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY144.51.1e-44101581163
           YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     +d+++  +++Cyv+CnfCnt+lav +P   l+++vtv+CG C++l  ++ +   q +   +h            l ++ +   sn++++ ++ +s
  XP_023515588.1  10 MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHH-----------PLTFQPQVGFSNDTQKGASISS 93 
                     5788999*************************************877655555554444443...........3334444444444444444444 PP

           YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                     +ss   s++  +e p +  v++PPek+ r Psayn+f+keeiqrika+nP+i hreafsaaaknWa +
  XP_023515588.1  94 TSS---SSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 158
                     444...34445566766779**********************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MSSSQDKSSM DLVQPNDHLC YVKCNFCNTL LAVGIPCRRL LETVTVKCGN CSNLSFLSTR  60
PPLQGQCIDH HPLTFQPQVG FSNDTQKGAS ISSTSSSSSM PNEPPSPNFV VKPPEKKHRL  120
PSAYNCFMKE EIQRIKAANP EIPHREAFSA AAKNWARYIP NSAAGSVSGT PNDVRKRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-62YABBY family protein