PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515707.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

YABBY

Protein Properties

Length: 180aa MW: 20196.7 Da PI: 7.2168

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206.7	8.8e-64	7	167	5	168
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q+l+ ++ + + + + + ++ s +++s+s++ +++ XP_023515707.1 7 IATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDV-QVPNYNLYSCNGPDFQGDFGS---SSSSSSSKCNNN 97 579************************************************99995.333322222233333333443...444444555555 PP YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 k++ + ++ + v+rPPek+qrvPsayn+fikeeiqrika+nP+ishreafs+aaknWah+P+i f XP_023515707.1 98 KMEIRANTTMATEERvVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPF 167 66656655555555449************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MASCLDIATE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQALS 60 WQDVQVPNYN LYSCNGPDFQ GDFGSSSSSS SSKCNNNKME IRANTTMATE ERVVNRPPEK 120 KQRVPSAYNQ FIKEEIQRIK ANNPEISHRE AFSTAAKNWA HYPRIPFWSD VGNQQSNEAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	9e-75	YABBY family protein