PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515736.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 998aa    MW: 113047 Da    PI: 6.3254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08382427146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r++WTt Ed+ l+  ++q G ++W   a  +g++Rt+ qc sr+q 
   XP_023515736.1 382 RNPWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQR 427
                      79******************************************96 PP
2Myb_DNA-binding44.73.2e-14435479146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +  WT++Ed++l  av+ +G g+W ++a+t+  gRt+ qc +rw k
   XP_023515736.1 435 KSEWTKDEDDKLRSAVAVFGEGDWQAVASTLE-GRTGPQCSNRWKK 479
                      578*****************************.***********98 PP
3Myb_DNA-binding34.93.6e-11488533147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T++Ed +l+ av ++G+++W++ a+ ++ gR   qc++rw++ 
   XP_023515736.1 488 RGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLP-GRNQVQCRERWFNC 533
                      799*****************************.***********996 PP
4Myb_DNA-binding39.51.3e-12540579142
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                      r  WT+eEd++l  a++++G   W+++a++++  Rt+++c+ 
   XP_023515736.1 540 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNECRR 579
                      568*****************99.*********.*******95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    
MSRRSHFDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDYINP RLSLPAAGDA  60
NLGSDSDDVD DLELLRNIQN RFSIAADEQP LSILPPVTAD EEEDDFEMLR SIQRRFAAYE  120
SDILSNKPDQ SCDLDGPLKM DSENTDVERL TSSERSSMIA FEKGSLPKAA LAFIDAIKKN  180
RSQQKFIRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALTQMV DPRVQLISAG  240
KPQAKDSSKK DKRLSSMCYG PAENSHVACY RTAWTKFHPV DRKRWSNFER ENLGKGIRQQ  300
FQEMVLQISV DQISEIQGFS AESDDLDNIL ASIKGLDITP EKIREFLPKV NWDKLASMYL  360
RGRSGAECEA RWLNFEDPLI NRNPWTTSED KNLLFTIQQK GLNNWIELAV SLGTNRTPFQ  420
CLSRYQRSLN ASILKSEWTK DEDDKLRSAV AVFGEGDWQA VASTLEGRTG PQCSNRWKKS  480
LDPARTKRGY FTPDEDSRLK IAVLLFGPKN WNKKAEFLPG RNQVQCRERW FNCLDPSLRR  540
CEWTEEEDLR LEIAIQEHGY SWAKVAACVP SRTDNECRRW KKLFPNQVPL LQEARKIQKV  600
ALISNFVDRE SERPALGPTD FRPVPNSHLL CNTDDPETAP KRNVRTRRMP VSRNEKSANG  660
DAPKRRKSNN QRNRADETAQ VDFGNNTSSV PEVKSTKPQR KRTRHGAYTT RRKGAPKIGC  720
NSERCAEQNS DTRSVEVQLN CKEPAERINS DCPETVDENG MEVFENKAAE MHSEGVVCFS  780
EQEENQNSTG SSGVSVLSEM TNDMDEYNPS TLPDTTLLAS ITADDIIETK GVNVADKDLD  840
DSNSFSLPQS CLELRTTDSE GVDSYSVDEF TDKSHGVCKP QGRRKKNSKR SNKSQDSLVS  900
CQQAELEMSG TNELHRCNQS KKRKHSGTNT SPLGTMEAVE EVDDCTLQGF LQKRLKRTTT  960
THDKKVDGSS STPPEVDNDD NDPTLALLLN DKLKRKKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1883924RRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQSKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-180MYB family protein