PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515754.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 345aa MW: 39154.7 Da PI: 6.4048

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl XP_023515754.1 14 KGLWSPEEDEKLFNYITSFGVGCWSSVPKLAGLERCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.8	6.6e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia +++ gRt++++k++w++ XP_023515754.1 67 RGMFSQQEEDLIISLHEVLGNR-WAQIATRLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRNSCCLKP KLRKGLWSPE EDEKLFNYIT SFGVGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIATRLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPITHKPLE DNMEAMKDQK PRGEVPHLLQ VNVSNITISS EASILNDSNH YYKQTEDSSQ 180 HFVNKIEFDS LSSYLGGEYN NNSQFAAAEY QYNNTFYSNS SMGMPSYTSS EHGNMSRTDF 240 SENSGSGFSC FLMNEVKESS SNSSVMSNYS GYQNSGGFSW ESEKKLEKLL QFETNQMKNM 300 GLKGSSEEET KNIETQMNSA SFGSYPLMSM SENERGGSFG VFHQI

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRNSCCLKP KLRKGLWSPE EDEKLFNYIT SFGVGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIATRLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPITHKPLE DNMEAMKDQK PRGEVPHLLQ VNVSNITISS EASILNDSNH YYKQTEDSSQ  180
HFVNKIEFDS LSSYLGGEYN NNSQFAAAEY QYNNTFYSNS SMGMPSYTSS EHGNMSRTDF  240
SENSGSGFSC FLMNEVKESS SNSSVMSNYS GYQNSGGFSW ESEKKLEKLL QFETNQMKNM  300
GLKGSSEEET KNIETQMNSA SFGSYPLMSM SENERGGSFG VFHQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	2e-81	MYB family protein