PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516042.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1678aa MW: 183170 Da PI: 6.222

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1e-09	1008	1049	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE +l +av +G++ ++ I+r++g +++ qck ++ XP_023516042.1 1008 SNWTDEEKSILMQAVSSYGKD-FDMISRCVG-SKSRDQCKVFFS 1049 58***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1678 aa Download sequence
MPPEPLPWDR KDLFKERKHE KSEAIGSATR WRDSYHGSRE FNRWGSADFR RPTGHGKLGG 60 WHQFSEETSH GYGPSRSFSD RVLEDESFRP SVPRGDGKYN RIGRESRGSF SQRDWRGHSK 120 ENSKEFGNPS RRPSSQDASS DQRSLDDTVT YSSPQSDFVS VSDKIHSKDR NDKVGGVYGL 180 GNGPKSDVEV SLGSTDWKPL KWSRSGSLSS RGSAYSSSTN SKNEKTDLPH RVASPLQSPS 240 AEATACLTSS LPSEDAISRK KPRLGWGDGL AKYEKEKVEV PDGSLRKEVT VLSSSSAELA 300 HSLGSNFAEK SPKTLPFSDC ASPATPSSFA CSSSSGLEDK PFSKAASVDG IICSSPGSSS 360 QNHLQKLFSS IEKVEISSIT NLGSSLVELF NSDDPSTVES CFGKSTLNKL LAYKGEISKT 420 LETTESEIDF LENELKSLKS ENGGNVSHPK SCSAVHLVES VPYFKEQDGV SCIAPRPAPL 480 KIVSSSDATV EKMPVCIGDM GIEDVGTKAD EIDSPGTVTS KFNEPSRVVK AVASNLVEND 540 HCSEATDSIV PDKMEGSFKK SGPFVDEHLT IGSGNECILA KSCTSESIYG DLTIQADSGS 600 SLRDLIFARN KEHASKAAEV IFKELPTEMC KISTQSTKIV SCFETEKLVK EKIAMRRQFL 660 KFKESALTLR FKALQHSWKE GLLHSVKKSR SRPQKKELSL RVTHSGHQKY RSSIRSRFVQ 720 HGESQNPVVN SEIAIRYSSK LLLNPQVKLY RNTLKMPAMI LDKNEKMALR FISHNGLVED 780 PCAVEKERNM INPWTSAERE MFWEKLSLFG KDFRKISSFL DLKTTADCIQ FYYKNHKSDS 840 FKKNKNLELG KQVKSSAVTY MLTSGKKWNP DVNATSLDIL GVASEMAAQA DGNIGNQQNC 900 NRHLGMGGDI GSKVTWSAST PSNKNNLDAL QTEKETVAAD VLAGICGSIS SEALSSCITS 960 AIDPSEDHKE RKCHKVDSAT KFPSTSDVMQ KTDNEPCSDD SSEDVDSSNW TDEEKSILMQ 1020 AVSSYGKDFD MISRCVGSKS RDQCKVFFSK ARKCLGLDLI HNSGDVGTPG SGNDSSGSGT 1080 DTDDHCVVET CGARSSDEFV SKSVNDLSTS VIINHEESVS AVTANMRNSS EFEESTAFEQ 1140 LDVTGAEAVG NLVSEISKEE DVPNLDSHSA CSLTNPAAFP SQPAHDHKIE GCSENTEACK 1200 RCNDPDILRP ESVATVDENS AAVSESRATT ELAFGGEEDG SDTNLHGQSM LQRSVQDSTG 1260 FNSNLALEAL GFDPQISHPK ILKVDSVANK SCIKDENSLV VRNSGPGVIG REEMLNQDMF 1320 PSTLVLQGVG DAHQKPMNRD DCADHQNRLS RHIESSEFPS SYPFNKQIVE DINRNINHTD 1380 FPAFQGLSKI NCNGTYVAED CYLQNCNSSK EPCHQAAELP LLPRNVELGH DHQNTSCSGN 1440 ASDSDVPRRK GDVKLFGQIL SHAPSLQNSS SGSNDCGEEK EFHKLRKSYD MGENVPLRSY 1500 GFWNGSRMQT GLSALPDSAI LQAKYPAAFS GYSATSLKTE QQPLRALANN GDRNLNELVS 1560 AFPTKDGVVD YQSYRSRDGV NMRPFPVDLF SEMHRRNGYD PLSLSSLQQQ GRVVVGMNVV 1620 GRGGILMGGS CTGVSDPVAA IKMHYAKSDQ YVGQPGSTFT REDGSWRGGG NGDLGSSR

Sequence ? help Back to Top

Protein Sequence Length: 1678 aa Download sequence

MPPEPLPWDR KDLFKERKHE KSEAIGSATR WRDSYHGSRE FNRWGSADFR RPTGHGKLGG  60
WHQFSEETSH GYGPSRSFSD RVLEDESFRP SVPRGDGKYN RIGRESRGSF SQRDWRGHSK  120
ENSKEFGNPS RRPSSQDASS DQRSLDDTVT YSSPQSDFVS VSDKIHSKDR NDKVGGVYGL  180
GNGPKSDVEV SLGSTDWKPL KWSRSGSLSS RGSAYSSSTN SKNEKTDLPH RVASPLQSPS  240
AEATACLTSS LPSEDAISRK KPRLGWGDGL AKYEKEKVEV PDGSLRKEVT VLSSSSAELA  300
HSLGSNFAEK SPKTLPFSDC ASPATPSSFA CSSSSGLEDK PFSKAASVDG IICSSPGSSS  360
QNHLQKLFSS IEKVEISSIT NLGSSLVELF NSDDPSTVES CFGKSTLNKL LAYKGEISKT  420
LETTESEIDF LENELKSLKS ENGGNVSHPK SCSAVHLVES VPYFKEQDGV SCIAPRPAPL  480
KIVSSSDATV EKMPVCIGDM GIEDVGTKAD EIDSPGTVTS KFNEPSRVVK AVASNLVEND  540
HCSEATDSIV PDKMEGSFKK SGPFVDEHLT IGSGNECILA KSCTSESIYG DLTIQADSGS  600
SLRDLIFARN KEHASKAAEV IFKELPTEMC KISTQSTKIV SCFETEKLVK EKIAMRRQFL  660
KFKESALTLR FKALQHSWKE GLLHSVKKSR SRPQKKELSL RVTHSGHQKY RSSIRSRFVQ  720
HGESQNPVVN SEIAIRYSSK LLLNPQVKLY RNTLKMPAMI LDKNEKMALR FISHNGLVED  780
PCAVEKERNM INPWTSAERE MFWEKLSLFG KDFRKISSFL DLKTTADCIQ FYYKNHKSDS  840
FKKNKNLELG KQVKSSAVTY MLTSGKKWNP DVNATSLDIL GVASEMAAQA DGNIGNQQNC  900
NRHLGMGGDI GSKVTWSAST PSNKNNLDAL QTEKETVAAD VLAGICGSIS SEALSSCITS  960
AIDPSEDHKE RKCHKVDSAT KFPSTSDVMQ KTDNEPCSDD SSEDVDSSNW TDEEKSILMQ  1020
AVSSYGKDFD MISRCVGSKS RDQCKVFFSK ARKCLGLDLI HNSGDVGTPG SGNDSSGSGT  1080
DTDDHCVVET CGARSSDEFV SKSVNDLSTS VIINHEESVS AVTANMRNSS EFEESTAFEQ  1140
LDVTGAEAVG NLVSEISKEE DVPNLDSHSA CSLTNPAAFP SQPAHDHKIE GCSENTEACK  1200
RCNDPDILRP ESVATVDENS AAVSESRATT ELAFGGEEDG SDTNLHGQSM LQRSVQDSTG  1260
FNSNLALEAL GFDPQISHPK ILKVDSVANK SCIKDENSLV VRNSGPGVIG REEMLNQDMF  1320
PSTLVLQGVG DAHQKPMNRD DCADHQNRLS RHIESSEFPS SYPFNKQIVE DINRNINHTD  1380
FPAFQGLSKI NCNGTYVAED CYLQNCNSSK EPCHQAAELP LLPRNVELGH DHQNTSCSGN  1440
ASDSDVPRRK GDVKLFGQIL SHAPSLQNSS SGSNDCGEEK EFHKLRKSYD MGENVPLRSY  1500
GFWNGSRMQT GLSALPDSAI LQAKYPAAFS GYSATSLKTE QQPLRALANN GDRNLNELVS  1560
AFPTKDGVVD YQSYRSRDGV NMRPFPVDLF SEMHRRNGYD PLSLSSLQQQ GRVVVGMNVV  1620
GRGGILMGGS CTGVSDPVAA IKMHYAKSDQ YVGQPGSTFT REDGSWRGGG NGDLGSSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-112	MYB family protein