PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516147.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24986.7 Da    PI: 9.8907
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53e-221761549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  XP_023516147.1 17 NESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
                    89************************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MRKSRGRQKV EMVKMPNESN LQVTFSKRRS GLFKKASELC TLCGAEIAII VFSPGKKVFS  60
FGHPCVEALI ERFVTRNPPP SSGTLQLIEA HRNANVRELN AQLTQVLNHL EMERKRGEEL  120
NKLRKANQPQ CWWELPIEEM ELHQLEQLKL SLDELKKNVT QQADRILIQT SNGNPPPQFF  180
PTPTPANPNQ QGGVYVVDQK NMISHLPYNY GSYGSRGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-68M-type_MADS family protein