PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516398.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 370aa MW: 41889 Da PI: 6.3226

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	6.8e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v ++G+ +W++ +++ g++R++k+c++rw +yl XP_023516398.1 14 RGLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTSYL 61 788*****************************************9996 PP
2	Myb_DNA-binding	46.1	1.2e-14	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+el++++++ G++ W+ Ia+ ++ gRt++++k++w++ XP_023516398.1 69 NFTPQEEELIIRLHAAIGSR-WAIIAQQLP-GRTDNDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MVRVPCCDKL NLKRGLWTAE EDAKILAYVS KHGTSNWTSA PKKAGLRRCG KSCRLRWTSY 60 LRPDLKHHNF TPQEEELIIR LHAAIGSRWA IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG 120 IDPVTHKPFS QILADYGNIG GLPRSTSRIG SLSRDLKTSP YMKPEQHSNS AQELFRGIDV 180 IMSSPTMLLP ETEPSIDKFT NGNVHRLNTN PSLNLLAQLH AMQLVTEASH CTSNEPIQPH 240 FNTQGYLPSS SSSSSTTTAG GRNSSSAFIW QDFLLEDAFL PSEPREHESV AELPLNQNAF 300 QTQNGISKDE MNKEKSEYQY DRFEAMHCLT ENDDVEASSS TENTFIETLF HQEDKILFDF 360 LNLLDEPLYD

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MVRVPCCDKL NLKRGLWTAE EDAKILAYVS KHGTSNWTSA PKKAGLRRCG KSCRLRWTSY  60
LRPDLKHHNF TPQEEELIIR LHAAIGSRWA IIAQQLPGRT DNDVKNYWNT KLRKKLSEMG  120
IDPVTHKPFS QILADYGNIG GLPRSTSRIG SLSRDLKTSP YMKPEQHSNS AQELFRGIDV  180
IMSSPTMLLP ETEPSIDKFT NGNVHRLNTN PSLNLLAQLH AMQLVTEASH CTSNEPIQPH  240
FNTQGYLPSS SSSSSTTTAG GRNSSSAFIW QDFLLEDAFL PSEPREHESV AELPLNQNAF  300
QTQNGISKDE MNKEKSEYQY DRFEAMHCLT ENDDVEASSS TENTFIETLF HQEDKILFDF  360
LNLLDEPLYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	4e-71	MYB family protein