PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516477.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 780aa MW: 86277.2 Da PI: 8.5826

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.2	1.1e-18	688	769	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e + Li++r +++ r++ +k +++lWee+s m g++rsp qCk+ w +l ++y+ k + ++++pyf++++a XP_023516477.1 688 KWKPEEMKRLIKLRGQLHARFQVSKGRMALWEEISTCMLGDGMNRSPGQCKSLWASLVQKYEDSKSEKTI-----KKSWPYFEEMDA 769 7**********************************************************999887775.....356*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MLALCFLTMT SLVSRKLYLI PHLLEDGVTK LKLLLLHMAT KITLVIPALD SHTPIFASSF 60 TVELIKKRLK ENGIFIPSRL KVFKMKRRFT AGPFEIEPIR VTHSIPDCCG LVLRCADGTI 120 FHTGDWKIDE SPLDGKVFDR ETLEQLSKEG VTLMMSDSTN VLSPGRTISE SVVADALLRR 180 ISAAKGRVIT TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAWK DGKAPIDPST 240 LVKVEDIDAY APKDLLIVTT GSQAEPRAAL NLASYGSSHS LKLSKEDMIL YSAKVIPGNE 300 SRVMKMLNRI SEIGSNIIMG KNELLHTSGH GYRGELEEVL QIVKPQHFLP IHGELLFLKE 360 HELLGRSTGI RHTTVIKNGE MLGVSHLRNR RVLSNGFTSL GMENLQLKYS DGDKAFGSSS 420 ELFVDERLKI ATDGIIVVSM EILRPQSVDG LNETGIRGKL RITTRCLWLD KGKLLDALHK 480 AAHAALSSCP VNCPLAHMER TVSELLRKMV RKYSGKRPEV IVMAVENPGG VLSEQLGRRL 540 SGKSDTRFGM SALRKAVDGQ PTKSHLNGIR PDGNDDLHSE DNSSQESQGY YIEPGSLLPE 600 EDYNSSNSNL TETESSGNEG LEDFWRPFIT PSSPVNELVK EDEGSVQPSK NTLEISNGGE 660 EGSDEGSLKT SNSSEKPLKP LKPVKSNKWK PEEMKRLIKL RGQLHARFQV SKGRMALWEE 720 ISTCMLGDGM NRSPGQCKSL WASLVQKYED SKSEKTIKKS WPYFEEMDAI LSDSEAVASK

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MLALCFLTMT SLVSRKLYLI PHLLEDGVTK LKLLLLHMAT KITLVIPALD SHTPIFASSF  60
TVELIKKRLK ENGIFIPSRL KVFKMKRRFT AGPFEIEPIR VTHSIPDCCG LVLRCADGTI  120
FHTGDWKIDE SPLDGKVFDR ETLEQLSKEG VTLMMSDSTN VLSPGRTISE SVVADALLRR  180
ISAAKGRVIT TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAWK DGKAPIDPST  240
LVKVEDIDAY APKDLLIVTT GSQAEPRAAL NLASYGSSHS LKLSKEDMIL YSAKVIPGNE  300
SRVMKMLNRI SEIGSNIIMG KNELLHTSGH GYRGELEEVL QIVKPQHFLP IHGELLFLKE  360
HELLGRSTGI RHTTVIKNGE MLGVSHLRNR RVLSNGFTSL GMENLQLKYS DGDKAFGSSS  420
ELFVDERLKI ATDGIIVVSM EILRPQSVDG LNETGIRGKL RITTRCLWLD KGKLLDALHK  480
AAHAALSSCP VNCPLAHMER TVSELLRKMV RKYSGKRPEV IVMAVENPGG VLSEQLGRRL  540
SGKSDTRFGM SALRKAVDGQ PTKSHLNGIR PDGNDDLHSE DNSSQESQGY YIEPGSLLPE  600
EDYNSSNSNL TETESSGNEG LEDFWRPFIT PSSPVNELVK EDEGSVQPSK NTLEISNGGE  660
EGSDEGSLKT SNSSEKPLKP LKPVKSNKWK PEEMKRLIKL RGQLHARFQV SKGRMALWEE  720
ISTCMLGDGM NRSPGQCKSL WASLVQKYED SKSEKTIKKS WPYFEEMDAI LSDSEAVASK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein