PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516542.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family NF-YA
Protein Properties Length: 256aa    MW: 27914.7 Da    PI: 7.0693
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.66.4e-31174230158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++p++VNaKQyq+Il+RRq+Rak+e+ekkl +k+rkpylheSRh+hA+rR R+sgGrF
  XP_023516542.1 174 QDPVFVNAKQYQGILRRRQARAKAEAEKKL-IKARKPYLHESRHQHAIRRSRSSGGRF 230
                     58****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MQSKSETNNQ LQSDPNGAPS TTIYYEPWCS SMGYSPFPLP VVGGNASSST SLEFPNGGSE  60
SNDGQSVSNN DVNDEEDDVS KEVQATGSPH SAGSYRQDAQ KMQHVSSNLP AMHGECLTQS  120
TQLELVGHSI ACASNPYQDP YYGGMMAFYG HQPVGYPMVG APHARMPLPI EIAQDPVFVN  180
AKQYQGILRR RQARAKAEAE KKLIKARKPY LHESRHQHAI RRSRSSGGRF AKKNEADGKE  240
SSEQQHGSSL TIKASE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.22e-49NF-YA family protein