PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516617.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LFY
Protein Properties Length: 387aa    MW: 43586.4 Da    PI: 6.793
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY621.81.2e-18913751386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslse 95 
                     mdpea+sa+lfkwdpr ++   +  +   a +++     +    +  l +leelf+ayG+ry+t+akiaelGftvstL+dmkdeel+d+m+sls+
  XP_023516617.1   1 MDPEALSATLFKWDPRGMVGGGSG-ASLPAPLPP----YSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSH 90 
                     9***************98855443.333333333....34566777799********************************************** PP

         FLO_LFY  96 ifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet..aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkka 188
                     ifr++llvGeryGikaa+raerrrl++e + ++rr+l+s+d++t  +ldalsqeglseepvq+eke +gsgg+g g++e+vaa+e +     kk+
  XP_023516617.1  91 IFRWELLVGERYGIKAAIRAERRRLDDEIDPSRRRHLMSNDTTTnvVLDALSQEGLSEEPVQQEKEVVGSGGGG-GAWEAVAAAEMR-----KKQ 179
                     ***************************9999*******9999887799**********************9998.999999998432.....333 PP

         FLO_LFY 189 skkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk.vt 282
                        ++++ +kk+++   +ed+ee+e   ee+++ + +erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcP k vt
  XP_023516617.1 180 ---RRRNVSKKKQVIVMEEDNEETEGGGEEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRQFLIQVQNIAKERGEKCPNKqVT 271
                     ...2222222222344667777888888888889999*****************************************************987** PP

         FLO_LFY 283 nqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqL 377
                     nqvfryakkagasyinkPkmrhYvhCYalhcLdeeasn+lrr fkergenvGawrqacykplvaiaa qgwdida+fnahprL+iWYvPtkLrqL
  XP_023516617.1 272 NQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNSLRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQL 366
                     *********************************************************************************************** PP

         FLO_LFY 378 Chlerskas 386
                     Ch+er++++
  XP_023516617.1 367 CHAERNSST 375
                     *****9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MDPEALSATL FKWDPRGMVG GGSGASLPAP LPPYSLRPRE LGLGGLEELF QAYGIRYYTA  60
AKIAELGFTV STLLDMKDEE LEDMMNSLSH IFRWELLVGE RYGIKAAIRA ERRRLDDEID  120
PSRRRHLMSN DTTTNVVLDA LSQEGLSEEP VQQEKEVVGS GGGGGAWEAV AAAEMRKKQR  180
RRNVSKKKQV IVMEEDNEET EGGGEEEENM EVSERQREHP FIVTEPGEVA RGKKNGLDYL  240
FHLYEQCRQF LIQVQNIAKE RGEKCPNKQV TNQVFRYAKK AGASYINKPK MRHYVHCYAL  300
HCLDEEASNS LRRVFKERGE NVGAWRQACY KPLVAIAAAQ GWDIDAIFNA HPRLAIWYVP  360
TKLRQLCHAE RNSSTASTSA AAALLPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176182RKKQRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-147LFY family protein