PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516618.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LFY
Protein Properties Length: 386aa    MW: 43458.3 Da    PI: 6.793
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY628.11.5e-19113741386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslse 95 
                     mdpea+sa+lfkwdpr ++   +  +   a +++     +    +  l +leelf+ayG+ry+t+akiaelGftvstL+dmkdeel+d+m+sls+
  XP_023516618.1   1 MDPEALSATLFKWDPRGMVGGGSG-ASLPAPLPP----YSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSH 90 
                     9***************98855443.333333333....34566777799********************************************** PP

         FLO_LFY  96 ifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet..aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkka 188
                     ifr++llvGeryGikaa+raerrrl++e + ++rr+l+s+d++t  +ldalsqeglseepvq+eke +gsgg+g g++e+vaa+e +     kk+
  XP_023516618.1  91 IFRWELLVGERYGIKAAIRAERRRLDDEIDPSRRRHLMSNDTTTnvVLDALSQEGLSEEPVQQEKEVVGSGGGG-GAWEAVAAAEMR-----KKQ 179
                     ***************************9999*******9999887799**********************9998.999999998432.....333 PP

         FLO_LFY 189 skkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtn 283
                        ++++ +kk+++   +ed+ee+e   ee+++ + +erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcP kvtn
  XP_023516618.1 180 ---RRRNVSKKKQVIVMEEDNEETEGGGEEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRQFLIQVQNIAKERGEKCPNKVTN 271
                     ...2222222222344667777888888888889999********************************************************** PP

         FLO_LFY 284 qvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLC 378
                     qvfryakkagasyinkPkmrhYvhCYalhcLdeeasn+lrr fkergenvGawrqacykplvaiaa qgwdida+fnahprL+iWYvPtkLrqLC
  XP_023516618.1 272 QVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNSLRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLC 366
                     *********************************************************************************************** PP

         FLO_LFY 379 hlerskas 386
                     h+er++++
  XP_023516618.1 367 HAERNSST 374
                     ****9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MDPEALSATL FKWDPRGMVG GGSGASLPAP LPPYSLRPRE LGLGGLEELF QAYGIRYYTA  60
AKIAELGFTV STLLDMKDEE LEDMMNSLSH IFRWELLVGE RYGIKAAIRA ERRRLDDEID  120
PSRRRHLMSN DTTTNVVLDA LSQEGLSEEP VQQEKEVVGS GGGGGAWEAV AAAEMRKKQR  180
RRNVSKKKQV IVMEEDNEET EGGGEEEENM EVSERQREHP FIVTEPGEVA RGKKNGLDYL  240
FHLYEQCRQF LIQVQNIAKE RGEKCPNKVT NQVFRYAKKA GASYINKPKM RHYVHCYALH  300
CLDEEASNSL RRVFKERGEN VGAWRQACYK PLVAIAAAQG WDIDAIFNAH PRLAIWYVPT  360
KLRQLCHAER NSSTASTSAA AALLPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176182RKKQRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-149LFY family protein