PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516873.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 323aa MW: 36367.6 Da PI: 6.8643

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw++yl XP_023516873.1 14 KGPWSPEEDAKLKAYIEHYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39.1	1.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ XP_023516873.1 69 GGFSEEEDNIISNLYISIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE HYGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIS NLYISIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 RVQSNSNNNG NSPSSSSNED PKEGLSNSAL ERLQLHMQLQ GFQNPLSFYT HPQLWPKLHP 180 VQEKIVQTLL NNQTPNFLSP NLQAATTTQL PEGQPPTGEE FFIHPKPNQA CLDQASGYHQ 240 VSNFMQVDEL PDVKADGFMA QTGQMAEFDC FKEVGGSSKD SLNWWAQNND QDMRSGSSSN 300 SWDSTSVLQS EWVFQDFELG YNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-99	MYB family protein