PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516924.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family NAC
Protein Properties Length: 218aa    MW: 24268.3 Da    PI: 7.0157
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.29.9e-3441301128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrF+Pt+eelv eyLk kv + +l++ ++i+e+   +++++Pwd+p    + ++++y Fsk+++     +r+ r   sgyWka+g++++++
  XP_023516924.1   4 LPPGFRFEPTEEELVFEYLKCKVFSFPLPA-SIIPEIttSVCNLDPWDIPGGGGNWQEDTYLFSKNQEC----DRRVRWSPSGYWKAKGSERKIV 93 
                     79***************************9.789988667**********6555667789****98775....48899999************** PP

             NAM  94 skkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                     s+++ +   vg++ktLvf+ g++++ +kt Wvmheyrl
  XP_023516924.1  94 SSSSDAvglVGMRKTLVFWMGSSSS-RKTGWVMHEYRL 130
                     *844435559*********998877.8*********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MRGLPPGFRF EPTEEELVFE YLKCKVFSFP LPASIIPEIT TSVCNLDPWD IPGGGGNWQE  60
DTYLFSKNQE CDRRVRWSPS GYWKAKGSER KIVSSSSDAV GLVGMRKTLV FWMGSSSSRK  120
TGWVMHEYRL LLSPSQTPTP PSVVINNMEK WVVCRIFCNN SGIKNDLHFH PLQYPVSAST  180
NDDTNALSDD SVSSTASSSS FSATTTMPFP NHHSSASN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-38NAC family protein